Gil Privé

I obtained my PhD from UCLA where I studied x-ray crystallography and DNA structure with Richard Dickerson. I then shifted my interests to protein structure and was a postdoc with Sung-Hou Kim at Berkeley, followed by a second postdoc position at UCLA in the labs of David Eisenberg and Ron Kaback. During this time, I got hooked on two research directions that I still pursue to this day – the family of BTB-domain containing proteins and membrane proteins/lipid binding proteins. In addition to my position in the Department of Biochemistry, I am a Senior Scientist at the Princess Margaret Cancer Centre.

Structural Biology of Protein Complexes

Our research centers on the study of protein structure and molecular recognition, with an emphasis on understanding protein-protein, protein-peptide and protein-lipid interactions.

Transcriptional repression complexes

Transcriptional regulation complexes are large, multicomponent assemblies involving proteins with various enzymatic activities, adaptor functions and DNA recognition modules. We are looking at interplay between the components of these assemblies in order to understand the structural “logic” of how these complexes carry out intricate biological activities.

We are studying a family of BTB-zinc finger transcriptional regulators that include proteins implicated in development and/or in cancer. In these proteins, the BTB domain is a protein-protein interaction module that recruits activator and/or corepressor complexes to promoter sites recognized by the C-terminal zinc-finger regions. Our objective is to understand and characterize the protein-protein interaction network of these proteins.

For example, we have determined crystal structures of complexes between the BTB domain of BCL6 and the minimal binding region of the SMRT, NCoR and BCoR corepressors. BCL6 is a key oncoprotein in B-cell lymphoma and exerts its biological effects through its interactions with HDAC-associated corepressor complexes. The structures reveal a peptide binding groove on the side of the BCL6 BTB domain dimer that forms the binding site for the corepressors. This detailed atomic view of the interactions between the two proteins identifies a key pocket that can be targeted with small molecule inhibitors.

Assembly and function of ubiquitin ligase E3 complexes

In addition to transcription, a key regulatory mechanism for the control of cellular programs involves the targeted modification of proteins with ubiquitin and ubiquitin-like proteins. One of the largest families of proteins involved with this process are the Cullin3-Ring-Ligases (CRL3s). This E3 ligase family uses Cullin3/Rbx1/BTB adaptor protein complexes to bring a ubiquitin-charged E2 protein together with a substrate protein destined for ubiquitination. Driven by BTB domain self-association, the CRL3s assemble with multiple copies of each of the protein components. This produces complexes with multiple E2~ubiqutin binding sites and multiple substrate binding sites, and we are studying how the multivalent architecture of the CRL3s affect substrate ubiquitination.

Structural biology of proteins involved in sphingolipid metabolism

Another area of focus in the lab is the mechanism of sphingolipid metabolism in the cell. Sphingolipids have roles in cell integrity and cell-cell recognition but can also can act as signaling molecules in cell growth and apoptosis. As a result, lipids such as ceramide and sphingosine-1-phospate have been implicated in tumor promotion.
Sphingolipids are in constant flux in cells, and the enzymes that modify and breakdown these lipids generally require a “sphingolipid activator protein”, or saposin. These saposin proteins interact with both membranes and proteins to assemble catalytically active complexes, and we are interested in the mechanism of the saposin activation reaction.
The small saposin proteins can access a surprisingly wide range of physical states with lipids, bilayers and proteins. Some saposins act as “physiological detergents” and can solubilize target sphingolipids, while others assemble membrane-bound enzyme complexes at the bilayer surface in a form of interfacial catalysis.

Courses Taught

BCH2123 Protein Structure, Prediction, and Homology Modelling
JBB2025H Protein Crystallography
BCH473Y Advanced Research Project in Biochemistry
BCH422H Membrane Proteins: Structure and Function
BCH340H Proteins: From Structure to Proteomics
MBP1302 Medical Biophysics: Structural Biology and Proteomics